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| summer_course:start [2012/08/23 14:26] – Jill Deines | summer_course:start [Unknown date] (current) – removed - external edit (Unknown date) 127.0.0.1 |
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| =====Assimilating Long Term Data Into Ecosystem Models===== | |
| PalEON Summer Course \\ | |
| August 12-18, 2012 | |
| |
| ===Course Location:=== | |
| <WRAP box> | |
| University of Notre Dame's Environmental Research Center (UNDERC)\\ | |
| 7645 Palmer Lake Rd\\ | |
| Land O' Lakes, WI 54540, USA\\ | |
| 1-715-547-6297\\ | |
| |
| See the [[http://nd.edu/~underc/|UNDERC website]] for more information about course location if interested. | |
| </WRAP> | |
| |
| ===Post-Course Materials=== | |
| <WRAP box> | |
| * [[summer_course:StatsResources|Statistics and R resources for further learning]] | |
| * [[https://www.dropbox.com/sh/k9jrh1fsdqq87ql/m9FTEPPFRE|Select Camp Photos]] | |
| * [[http://www.flickr.com/photos/sfjwaweh/sets/72157631149617452/|Jack's Camp Photos - Full Set]] | |
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| </WRAP> | |
| ===Course Info:=== | |
| <WRAP box> | |
| {{:summer_course:packing_list_and_site_info.pdf|Packing List and Site Info}} | |
| |
| {{:summer_course:software_installation_instructions.pdf|Software installation instructions}} | |
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| {{:summer_course:background_reading.pdf|Probability background readings}} | |
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| [[summer_course:flights|Van Groups, Pick-up Info, and Flight Schedules]] | |
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| {{:summer_course:revised_paleon_schedule.pdf|Course Schedule}} | |
| </WRAP> | |
| |
| ===Course modules=== | |
| <WRAP box> | |
| |
| Note: the R code files for Chris' modules are not yet here because of some technical difficulties with the website. Chris will try to post those by the end of August. They have a few fixes relative to the versions given out at UNDERC. All of the code in the R files is also embedded in these pdfs. | |
| |
| Day 1: Monday \\ | |
| {{summer_course:modules:rintro.pdf|R module pdf}} | |
| {{summer_course:modules:rintro.R|R module R code}} | |
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| Day 2: Tuesday \\ | |
| {{summer_course:modules:stats.pdf|Statistics module pdf}} | |
| {{summer_course:modules:stats.R|Statistics module R code}} | |
| |
| {{summer_course:modules:bayes.pdf|Bayes module pdf}} | |
| {{summer_course:modules:bayes.R|Bayes module R code}} | |
| |
| {{summer_course:modules:paleonmodels.pdf|Ecosystem models pdf}} | |
| |
| Day 3: Wednesday \\ | |
| {{:summer_course:paleoecoinformatics_day3.pdf|Paleoecoinformatics pdf}} | |
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| Day 4: Thursday \\ | |
| {{summer_course:pecan1.pdf|PEcAn part 1 pdf}} | |
| |
| {{summer_course:pecan2.pdf|PEcAn part 2 pdf}} | |
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| {{summer_course:pecan3.pdf|PEcAn part 3 pdf}} | |
| |
| {{summer_course:pecan_demo_handout.v3.pdf|PEcAn handout pdf}} | |
| |
| {{summer_course:paleon_da.pdf|Data Assimilation pdf}} | |
| |
| {{summer_course:parameterassimilation.pdf|Parameter data assimilation handout pdf}} | |
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| Day 5: Friday \\ | |
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| {{summer_course:sda_handout.pdf|State data assimilation handout pdf}} | |
| |
| </WRAP> | |
| |
| ===Useful papers=== | |
| <WRAP box> | |
| {{summer_course:forestsimulators.pdf|Dietze & Latimer 2012 Encyclopedia. Forest Simulators pdf}} | |
| |
| {{:summer_course:blaauw.christen.2011.BACON.pdf| | |
| Blaauw and Christen 2011 BACON pdf}} | |
| |
| {{:summer_course:breweretal2012tree_paleoecoinformatics.pdf| | |
| Brewer et al 2012 TREE Paleoecoinformatics pdf}} | |
| |
| {{summer_course:Clark2007.pdf|Clark et al 2007 Ecological Apps. Tree growth inference and prediction from diameter censuses and ring widths pdf}} | |
| |
| {{summer_course:LeBauer2012pecan.pdf| LeBauer et al. 2012. Facilitating feedbacks between field measurements and ecosystem models pdf}} | |
| |
| {{:summer_course:paciorek.mclachlan.2009.pdf| | |
| Paciorek and McLachlan 2009, Journal of the American Statistical Association. Mapping ancient forests: Bayesian inference for spatio-temporal trends in forest composition pdf}} | |
| |
| {{summer_course:wikle_berliner_2007.pdf|Wikle & Berliner 2007. PhysicaD.A Bayesian tutorial for data assimilation pdf}} | |
| |
| {{summer_course:richardson2006.pdf|Richardson et al 2006. AgForMet. A multi-site analysis of random error in tower-based measurements of carbon and energy fluxes pdf}} | |
| |
| {{summer_course:keenan2011.pdf| Keenan et al 2011. Oecologia. The model–data fusion pitfall: assuming certainty in an uncertain world pdf}} | |
| |
| {{summer_course:zobitz2011.pdf|Zobitz et al 2011. Oecologia. A primer for data assimilation with ecological models using Markov Chain Monte Carlo (MCMC). pdf}} | |
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| </WRAP> | |
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| [[summer_course:admin:start|Course Administration]] | |
