This is an old revision of the document!
Assimilating Long Term Data Into Ecosystem Models
PalEON Summer Course
August 12-18, 2012
Course Location:
University of Notre Dame's Environmental Research Center (UNDERC)
7645 Palmer Lake Rd
Land O' Lakes, WI 54540, USA
1-715-547-6297
See the UNDERC website for more information about course location if interested.
Course Contacts:
Jason McLachlan (Lead PI)
jmclachl@nd.edu
cell: 530-902-9829
Jill Deines (Project Manager)
jillian.deines@gmail.com
cell: 513-290-7489
Course Info:
Course modules
Note: the R code files for Chris' modules are not yet here because of some technical difficulties with the website. Chris will try to post those by the end of August. They have a few fixes relative to the versions given out at UNDERC. All of the code in the R files is also embedded in these pdfs.
Day 1: Monday
R module pdf
R module R code
Day 2: Tuesday
Statistics module pdf
Statistics module R code
Bayes module pdf Bayes module R code
Day 3: Wednesday
Paleoecoinformatics pdf
Day 4: Thursday
PEcAn part 1 & 2 pdf
Parameter data assimilation handout pdf
Day 5: Friday
Useful papers
Dietze & Latimer 2012 Encyclopedia. Forest Simulators pdf
Blaauw and Christen 2011 BACON pdf
Brewer et al 2012 TREE Paleoecoinformatics pdf
LeBauer et al. 2012. Facilitating feedbacks between field measurements and ecosystem models pdf
Wikle & Berliner 2007. PhysicaD.A Bayesian tutorial for data assimilation pdf
