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start [2013/08/22 14:33] – added text Jody Petersstart [2021/01/04 14:24] (current) Jody Peters
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  =====Welcome to the PalEON Wiki=====  =====Welcome to the PalEON Wiki=====
 +** Quick access to {{https://docs.google.com/spreadsheets/d/1QaSTJ3ng9WzgBmJBphnfCvdDKELlo_U2bySGiZdD8DE/edit?usp=sharing|List of SDA Sites}}**
  
-<WRAP box>+** Quick access to [[data_management:NSFawardnumbers|NSF PalEON2 Award Numbers]]** 
 + 
 + 
 + 
 +==Running Tally of Fun Information (as of 11-20-20)== 
 +Number of People Who Have Participated on the Project: 46 undergraduate students, 27 graduate students, 15 post-docs\\ 
 +Number of Products: 95 papers accepted or published, 4 book or book chapters, 231 talks, 75 posters 
 + 
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 ====Aims & Goals==== ====Aims & Goals====
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 ===Member Login: Top Right of Page=== ===Member Login: Top Right of Page===
   * PalEON members who have been invited to this wiki **please click the login box on the top right** to register an account at the wiki.  To register you must provide your name, a user name (first initial, last name is preferred), your password and a valid email address.   * PalEON members who have been invited to this wiki **please click the login box on the top right** to register an account at the wiki.  To register you must provide your name, a user name (first initial, last name is preferred), your password and a valid email address.
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 ===Basic Editing=== ===Basic Editing===
-  * **To edit a page,** click the "edit this page" tab at the top.  This opens a script window, and has the ability to preview your changes below before saving them.+  * **To edit a page,** click the "edit this page" tab at the top.  This opens a script window, and has the ability to preview your changes below before saving them
   * [[http://144.92.235.115/dokuwiki/doku.php/wiki%3Bsyntax|Basic editing tips]] can be found here or accessed from the left sidebar at any time   * [[http://144.92.235.115/dokuwiki/doku.php/wiki%3Bsyntax|Basic editing tips]] can be found here or accessed from the left sidebar at any time
 +  * Here are [[https://paleon.geography.wisc.edu/doku.php/data_management%3Bstart|instructions for uploading/downloading files using script or the wiki icons]] under **Useful Resources** 
   * **TIP:** It's often helpful to open the wiki in a second window and steal syntax format from another page   * **TIP:** It's often helpful to open the wiki in a second window and steal syntax format from another page
  
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 </WRAP> </WRAP>
  
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-<WRAP box column 93.5%> +<WRAP important column 89.5%> 
-====PalEON News====+===Data-Use and Authorship Guidelines=== 
 +**Be sure to refer to Version 1.6 of the {{:data_management:paleonfairusepolicydraftversion1.6.pdf|PalEON Fair Use Policy}} as you are writing your papers and using PalEON data**
  
-A complete listing of PalEON activities and meetings can be seen [[meetings:start|here]].  
- 
-  * **Spring 2013 Newsletter** {{:useful_papers:paleon_newsletter_may_2013_2_.pdf|Here it is!}} 
- 
-    * **Fall 2012 edition of //The Posterior Distribution// is out.**  The latest edition of the PalEON quarterly newsletter {{useful_papers:newsletters:paleon_newsletter_fall_2012.pdf|can be found here}}.  Check it out to learn about recent progress and upcoming events! 
-   
-  * **[[http://oxlel.zoo.ox.ac.uk/50-pressing-questions-palaeoecologyPalEON|Palaeo50: What are the 50 most pressing questions in paleoecology?]]**  This two day workshop in Oxford in December seeks to identify pressing problems in paleoecology and help shape the field's research direction.  [[https://docs.google.com/document/d/1p0MMapnZI8y_TGeiRYzFxdBykkyOhRfLL0mMPWHIJV8/edit|Add your thoughts on outstanding questions in the field to the PalEON Team 50 Google Doc here]] by October 31, 2012.   
- 
-    * **Mike Dietze talks PalEON at the NEON Annual Meeting.** October 17, 2012. PalEON PI Mike Dietze was invited to speak about his work on two NSF Macrosystems Biology projects at the NEON, Inc., Annual Members Meeting held this week in Boulder, Colorado.  His talk, “A Tale of Two Macrosystems Biology Projects,” detailed the goals, progress, and plans of both PalEON and a second Macrosystems project on which Mike works, “Climate change impacts on forest biodiversity.” {{:products:dietze_neon_2012_smaller.pdf|View presentation here}} 
- 
-    *September 20, 2012: [[http://www.usgs.gov/newsroom/article.asp?ID=3376&from=rss&utm_source=twitterfeed&utm_medium=twitter&utm_campaign=usgs_releases#.UFsegI1lRWY|PalEON's own Steve Jackson to lead the USGS Southwest Climate Science Center]].  Go Steve!   
- 
-  *August 12-18, 2012: PalEON Summer Course was a great success!  Check out the [[summer_course:start|Course Pages]] for course materials.  [[https://www.dropbox.com/sh/k9jrh1fsdqq87ql/m9FTEPPFRE|Photos here!]] 
- 
-  *July 20, 2012: The Summer 2012 issue of //The Posterior Distribution//, the PalEON quarterly newsletter, is out: {{:useful_papers:newsletters:paleon_newsletter_july_2012.pdf|Summer 2012}} 
- 
-  *July 2012: PalEON's first three publications are now out or in press.  Check out Goring et al. 2012, Kumar et al. 2012, and Jackson 2012 on the [[products:start|Products Page]]. 
- 
-  *May 25, 2012: 2 downscaled GCM driver datasets are now available for use to run PalEON phase 1 simulations. The final driver dataset will be available soon.  Instructions for download [[projects:terrestrial_ecosystem_modeling:driver_datasets|here]] 
- 
-  *May 15, 2012: Happy 1 year anniversary, PalEON! 
- 
-  *May 1, 2012: First annual report submitted to NSF.  You can find the report on the [[useful_papers:start|Useful Papers page]].  
- 
-  *April 18, 2012: PalEON 2 Proposal submitted!  You can find the proposal text on the [[useful_papers:start|Useful Papers page]].  
- 
-  *January 2-4, 2012: [[http://144.92.235.115/dokuwiki/doku.php/meetings%3Bchijan2012%3Bstart|PalEON modelling meeting in Chicago]] 
- 
-  * October 11 - 12, 2011:  PalEON Settlement Vegetation Workshop (Madison, WI):  A meeting to connect modelers, statisticians and historical ecologists and to facilitate the use of the Public Lands Survey, Township Surveys and General Land Office surveys. [[meetings:oct2011msn_setvegworkshop|Minutes and Summaries here]]. 
- 
-  * ESA 2011:  A lot of interest in PalEON demonstrated there.  Jason McLachlan's 8/9 Tuesday talk in the NEON symposium filled the room.  The Wednesday night PalEON open meeting was well attended by the paleo-data community, and the discussion and response was favorable.  The general mood was excitement and the feeling that this is the next step to take.  
-  
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 =====Sections===== =====Sections=====
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 ====People==== ====People====
  
-[[People:start|This section]] is the repository for information about individual members of the PalEON project.  Not only will this link to a brief biography, but it will also provide links to the projects, proposals, data and products that the individual is associated with.  We welcome all Participants to begin editing their own page.  The Administrators (Simon Goring and Bjorn Brooks) will also take care to ensure that the pages are kept up to date as much as possible.  The PalEON postdocs (Simon Goring, Zuofong Shang, and Bjorn Brooks)'s Project Journals of their project activities (like a notebook) can be found here.  +[[People:start|This section]] includes information about who the individual members of the PalEON project are.  We welcome all Participants to begin editing their own page.  The Administrators (Simon Goring and Jody Peters) will also take care to ensure that the pages are kept up to date as much as possible.
  
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- 
-<WRAP col3> 
-  * [[People:Simon Goring]]'s Project [[sgjournal:start|Journal]] 
-  * [[People:Bjorn Brooks]]' Project [[bbjournal|Journal]] 
-  * [[People:Zuofeng Shang]]'s Project [[zsjournal|Journal]] 
 </WRAP> </WRAP>
 +
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 +====Working Groups====
 +[[working_groups:start|Working Groups]] is a repository for the different projects in PalEON.  If you start a new project, please provide a brief description as well as the email list of participants.  Use this section to keep notes, data and initial results as you work towards versioned data products (which should then be posted in the [[data_and_products:start|Data and Products section]]) These are fairly static, overarching descriptions that provide the big picture of each group and the members.  Anyone can update this as new people join the project and as the projects morph.
 </WRAP> </WRAP>
  
 <WRAP box column 93.5%> <WRAP box column 93.5%>
-====Goals (To Do Lists)==== +====Data and Products==== 
-[[goals_to_do_lists:start|This section]] provides place to keep track of Summer/Yearly goalsTo encourage coordination among projects, each PI (or groups of PIs) should identify major goals each summer and year and indicate who you are working with on these projects.  This way Jody, Jason, or other PalEON team members can check in to see how things are progressing, and/or if plans have changed.   +We've created the [[data_and_products:start|Data and Products section]] as repository for versioned data products that are ready to share within and across Working Groups Data and products that are not versionedinitial results or are works in progress should be kept in the Working Groups section.  The Data and Product section is the fun part of PalEON - it is where we see results from our hard work!
-For those of you that like check lists this will be a great place to “check off” (or insert DONE on) your To Do list.+
 </WRAP> </WRAP>
  
 <WRAP box column 93.5%> <WRAP box column 93.5%>
-====Projects====+====Data Management====
  
-[[Projects:start|This section ]] is for currently active projects within PalEON Phase 1.  It should include a brief introduction for the page/project and any living documents intended for publication or dissemination.  These pages are also intended for discussion among members Are there data needs that another section/project can fulfill?  Are there synergies, conflicts?  Check out the project page, the discussion pages and any linked documents.+[[data_management:start|This section ]] provides policies and procedures for PalEON's data including details about the tools we use to keep track of data/code/manuscripts and how to acknowledge PalEON in scientific publications.  Here are [[https://paleon.geography.wisc.edu/doku.php/data_management%3Bstart|instructions for uploading/downloading files using script or the wiki icons]] under **Useful Resources**
  
-</WRAP> 
- 
-<WRAP box column 93.5%> 
-====Manuscript Ideas==== 
-We've created [[manuscript_ideas:start|the Manuscript Ideas section]] to keep all PalEON team members up to date on what manuscripts are being written and to facilitate collaboration where appropriate. Post your manuscript outlines with primary author(s) here so others can see if there is someplace they can contribute data or analyses and to reduce the potential for duplicate efforts. Include authors, so others know who to contact. Given the limitations of the wiki, this section is not meant to be a working document for multiple authors to make changes simultaneously (like google docs). 
-Authorship guidelines will also be included here, when the //Authorship Social Club// finalizes them. 
 </WRAP> </WRAP>
  
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-====Proposals====+====Papers & Presentations====
  
-[[Proposals:start|This section]] is intended to be the site for great ideas you may have that could be accomplished in PalEON2.0, or with others outside the PalEON domain.  For each new project you can link to personnel that may be interested in the proposal, projects that might feed into the proposal and data that might be useful.  Use it as a sandbox for upcoming work, to brainstorm or to develop independent research.+[[papers_presentations:start|This section]] is where we keep items related to publications and presentations.  This section is a repository for:  
 +  - Manuscripts ideas and draftsIf there are papers gestating be sure to put them here adn add tentatiev co-author lists!  We have a large group and in this section are trying to avoid duplicating efforts on projects when instead there should be collaboration 
 +  - All papers and presentations from PalEON projects - this information is critical as we prepare our annual reports for NSF!  
 +  - PalEON related posters and presentations 
 +  - The biannual PalEON Newsletters.  
 +  - General papers that provide useful information for specific PalEON topics.  
 +  - PalEON logos
  
 </WRAP> </WRAP>
  
-<WRAP clear> </WRAP> 
  
 <WRAP box column 93.5%> <WRAP box column 93.5%>
  
-====Products==== +====Courses and Camps==== 
-[[Products:start|This section]] will be filled once we get papers and other products out of the PalEON project.  Please be sure to link back any papers published through PalEON, any PowerPoint presentations or posters you deliver, or any related academic documents so that we can maintain a repository for the project. +[[courses_and_camp:start|This section]] includes details about courses for PalEON grad students and material for Camp PEON.  
- +
-</WRAP> +
- +
-<WRAP box column 93.5%> +
-====Figures==== +
-[[figures:start|This section]] is a repository for figures as well as presentations. Since the majority of figures put together for various talks are typically on individual people's computers, we thought this might be a nice location to let other team members "shop" for figures when preparing their talks. Figures should include details about the author (so credit can be given) and the date (in there is a newer version). **If you use someone's figure, please give appropriate credit!\\ This section also includes presentations to facilitate options to browse for figure ideas that may not be uploaded to the wiki.  The presentations listed here can also be found in the [[products:start|Products]] page.  +
  
 </WRAP> </WRAP>
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-====Public Data==== +====Grant Administration==== 
-[[Public Data:start|Public Data]] is for anything that may be of use to the PalEON community that can be actively shared.  Please respect data use agreements.  We will establish a formal data use policy that will be posted in this section.  Public data was the best 'P' word I could come up with.  If you have any other suggestions I'd love to hear them.+Details about the NSF PalEON grant are located in [[grant_administration:start|this section]] including Award numbers, PalEON 1 and 2 NSF proposals and annual and final reports.  
  
 </WRAP> </WRAP>

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